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Pull requests: nf-core/modules

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214 Open 8,258 Closed
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Pull requests list

New module staphscan new module Adding a new module
#11578 opened May 9, 2026 by riccabolla Loading…
7 of 17 tasks
feat(gtdbtk/*): bump to 2.7.2
#11576 opened May 8, 2026 by dialvarezs Member Loading…
17 tasks
fix the collision between input and output filename for single read
#11575 opened May 8, 2026 by piplus2 Contributor Loading…
6 of 17 tasks
1
@piplus2
3
Add new component: deeptools/bamcompare
#11572 opened May 8, 2026 by oliverdrechsel Loading…
9 of 17 tasks
1
12
Add HTSLIB/BGZIPTABIX and deprecate redundant modules new module Adding a new module size/xl
#11571 opened May 8, 2026 by itrujnara Contributor Loading…
24 of 26 tasks
3
Support matrix.mtx.gz cellbender remove-background input
#11565 opened May 7, 2026 by alecw • Draft
13 tasks
Add Binette
#11563 opened May 7, 2026 by prototaxites Contributor Loading…
12 of 17 tasks
8
Update to topics getorganelle/*
#11561 opened May 7, 2026 by LouisLeNezet Contributor Loading…
17 tasks
2
@LouisLeNezet
2
PROOF OF CONCEPT: samtools/multicommand
#11550 opened May 7, 2026 by prototaxites Contributor • Draft
17 tasks
10
Add the finaletoolkit/delfi module
#11547 opened May 7, 2026 by lbeltrame Contributor Loading…
11 of 17 tasks
@lbeltrame
7
Add fgumi/extract
#11546 opened May 6, 2026 by atrigila Contributor Loading…
6
Disable implicit parallelism in variancepartition/dream
#11545 opened May 6, 2026 by delfiterradas Contributor • Draft
17 tasks
1
@delfiterradas
2
Remove fai index from bowtie2 modules
#11537 opened May 5, 2026 by Kevin-Brockers Contributor Loading…
5 of 6 tasks
New module: parsesdrf/convert
#11514 opened May 4, 2026 by jonasscheid Contributor Loading…
12 of 14 tasks
10
feat(spikeinterface/sort): add module wrapping SpikeInterface 0.101.2 spike sorting
#11464 opened May 3, 2026 by olaflaitinen Member • Draft
8 of 12 tasks
Update gamma/gamma to using the versions topic channel size/s
#11462 opened May 1, 2026 by mribeirodantas Member Loading…
14 of 17 tasks
1
@mribeirodantas
1
feat: allow bwa-mem to output sam format
#11457 opened May 1, 2026 by piplus2 Contributor Loading…
7 of 17 tasks
1
@piplus2
16
Update whamg: topic versions, stub block, sanitizeOutput
#11450 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
3
Update wfmash: topic versions, stub block, sanitizeOutput
#11449 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
1
Update smoothxg: topic versions, stub block, sanitizeOutput
#11448 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
4
Update seqsero2: topic versions, stub block, sanitizeOutput
#11446 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
1
Update salsa2: topic versions, stub block, sanitizeOutput
#11445 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
2
Update mygene: topic versions, stub block, sanitizeOutput
#11441 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
3
Add stub block and migrate plasmidid to topic channels
#11438 opened Apr 30, 2026 by HReed1 Contributor Loading…
7
Add stub block and migrate pairix to topic channels
#11437 opened Apr 30, 2026 by HReed1 Contributor Loading…
2
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