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Standardize version emission and restore EDAM comments
1 parent 3e919ce commit 3c453f9

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Lines changed: 3 additions & 3 deletions

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modules/nf-core/seqsero2/main.nf

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -14,7 +14,7 @@ process SEQSERO2 {
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tuple val(meta), path("results/*_log.txt") , emit: log
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tuple val(meta), path("results/*_result.tsv"), emit: tsv
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tuple val(meta), path("results/*_result.txt"), emit: txt
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tuple val("${task.process}"), val('seqsero2'), eval('SeqSero2_package.py --version 2>&1 | sed "s/^.*SeqSero2_package.py //"'), topic: versions, emit: versions_seqsero2
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tuple val("${task.process}"), val('seqsero2'), eval('SeqSero2_package.py --version 2>&1 | sed "s/^.*SeqSero2_package.py //"'), topic: versions, emit: versions
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when:
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task.ext.when == null || task.ext.when

modules/nf-core/seqsero2/meta.yml

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -49,7 +49,7 @@ output:
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description: Tab-delimited summary of the SeqSero2 results
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pattern: "*_result.tsv"
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ontologies:
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- edam: http://edamontology.org/format_3475
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- edam: http://edamontology.org/format_3475 # TSV
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txt:
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- - meta:
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type: map
@@ -61,7 +61,7 @@ output:
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description: Detailed summary of the SeqSero2 results
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pattern: "*_result.txt"
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ontologies: []
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versions_seqsero2:
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versions:
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- - ${task.process}:
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type: string
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description: The name of the process

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