Fix versions

fellen31 · fellen31 · commit 4db775f1c5b6 · 2026-02-27T13:45:08.000+01:00
diff --git a/modules/nf-core/paraphrase/main.nf b/modules/nf-core/paraphrase/main.nf
@@ -16,7 +16,7 @@ process PARAPHRASE {
     tuple val(meta), path("*.json"), emit: json, optional: true
     tuple val(meta), path("*.tsv"), emit: tsv, optional: true
 
-    tuple val("${task.process}"), val('paraphrase'), eval("paraphrase --version"), topic: versions, emit: versions_paraphrase
+    tuple val("${task.process}"), val('paraphrase'), eval("paraphrase --version | sed 's/.* //'"), topic: versions, emit: versions_paraphrase
 
     when:
     task.ext.when == null || task.ext.when
diff --git a/modules/nf-core/paraphrase/meta.yml b/modules/nf-core/paraphrase/meta.yml
@@ -67,7 +67,7 @@ output:
       - paraphrase:
           type: string
           description: The name of the tool
-      - paraphrase --version:
+      - paraphrase --version | sed 's/.* //':
           type: eval
           description: The expression to obtain the version of the tool
 topics:
@@ -78,7 +78,7 @@ topics:
       - paraphrase:
           type: string
           description: The name of the tool
-      - paraphrase --version:
+      - paraphrase --version | sed 's/.* //':
           type: eval
           description: The expression to obtain the version of the tool
 authors:
diff --git a/modules/nf-core/paraphrase/tests/main.nf.test.snap b/modules/nf-core/paraphrase/tests/main.nf.test.snap
@@ -18,12 +18,12 @@
                     [
                         "PARAPHRASE",
                         "paraphrase",
-                        "paraphrase 0.2.0"
+                        "0.2.0"
                     ]
                 ]
             }
         ],
-        "timestamp": "2026-02-27T13:28:34.178964653",
+        "timestamp": "2026-02-27T13:40:26.241158374",
         "meta": {
             "nf-test": "0.9.4:md5,3b1b0b457e32f7b2c51c0cf5658dd1cf",
             "nextflow": "26.01.1"
@@ -48,12 +48,12 @@
                     [
                         "PARAPHRASE",
                         "paraphrase",
-                        "paraphrase 0.2.0"
+                        "0.2.0"
                     ]
                 ]
             }
         ],
-        "timestamp": "2026-02-27T13:28:22.923218917",
+        "timestamp": "2026-02-27T13:40:14.980861669",
         "meta": {
             "nf-test": "0.9.4:md5,3b1b0b457e32f7b2c51c0cf5658dd1cf",
             "nextflow": "26.01.1"
@@ -78,12 +78,12 @@
                     [
                         "PARAPHRASE",
                         "paraphrase",
-                        "paraphrase 0.2.0"
+                        "0.2.0"
                     ]
                 ]
             }
         ],
-        "timestamp": "2026-02-27T13:28:52.544137295",
+        "timestamp": "2026-02-27T13:40:44.559269452",
         "meta": {
             "nf-test": "0.9.4:md5,3b1b0b457e32f7b2c51c0cf5658dd1cf",
             "nextflow": "26.01.1"
@@ -108,12 +108,12 @@
                     [
                         "PARAPHRASE",
                         "paraphrase",
-                        "paraphrase 0.2.0"
+                        "0.2.0"
                     ]
                 ]
             }
         ],
-        "timestamp": "2026-02-27T13:29:06.479213928",
+        "timestamp": "2026-02-27T13:40:58.558739068",
         "meta": {
             "nf-test": "0.9.4:md5,3b1b0b457e32f7b2c51c0cf5658dd1cf",
             "nextflow": "26.01.1"
@@ -138,12 +138,12 @@
                     [
                         "PARAPHRASE",
                         "paraphrase",
-                        "paraphrase 0.2.0"
+                        "0.2.0"
                     ]
                 ]
             }
         ],
-        "timestamp": "2026-02-27T13:28:59.506106995",
+        "timestamp": "2026-02-27T13:40:51.544118803",
         "meta": {
             "nf-test": "0.9.4:md5,3b1b0b457e32f7b2c51c0cf5658dd1cf",
             "nextflow": "26.01.1"
@@ -168,12 +168,12 @@
                     [
                         "PARAPHRASE",
                         "paraphrase",
-                        "paraphrase 0.2.0"
+                        "0.2.0"
                     ]
                 ]
             }
         ],
-        "timestamp": "2026-02-27T13:28:45.395866251",
+        "timestamp": "2026-02-27T13:40:37.597570496",
         "meta": {
             "nf-test": "0.9.4:md5,3b1b0b457e32f7b2c51c0cf5658dd1cf",
             "nextflow": "26.01.1"

Original file line number	Diff line number	Diff line change
`@@ -18,12 +18,12 @@`
`18`	`18`	`[`
`19`	`19`	`"PARAPHRASE",`
`20`	`20`	`"paraphrase",`
`21`		`- "paraphrase 0.2.0"`
	`21`	`+ "0.2.0"`
`22`	`22`	`]`
`23`	`23`	`]`
`24`	`24`	`}`
`25`	`25`	`],`
`26`		`- "timestamp": "2026-02-27T13:28:34.178964653",`
	`26`	`+ "timestamp": "2026-02-27T13:40:26.241158374",`
`27`	`27`	`"meta": {`
`28`	`28`	`"nf-test": "0.9.4:md5,3b1b0b457e32f7b2c51c0cf5658dd1cf",`
`29`	`29`	`"nextflow": "26.01.1"`
`@@ -48,12 +48,12 @@`
`48`	`48`	`[`
`49`	`49`	`"PARAPHRASE",`
`50`	`50`	`"paraphrase",`
`51`		`- "paraphrase 0.2.0"`
	`51`	`+ "0.2.0"`
`52`	`52`	`]`
`53`	`53`	`]`
`54`	`54`	`}`
`55`	`55`	`],`
`56`		`- "timestamp": "2026-02-27T13:28:22.923218917",`
	`56`	`+ "timestamp": "2026-02-27T13:40:14.980861669",`
`57`	`57`	`"meta": {`
`58`	`58`	`"nf-test": "0.9.4:md5,3b1b0b457e32f7b2c51c0cf5658dd1cf",`
`59`	`59`	`"nextflow": "26.01.1"`
`@@ -78,12 +78,12 @@`
`78`	`78`	`[`
`79`	`79`	`"PARAPHRASE",`
`80`	`80`	`"paraphrase",`
`81`		`- "paraphrase 0.2.0"`
	`81`	`+ "0.2.0"`
`82`	`82`	`]`
`83`	`83`	`]`
`84`	`84`	`}`
`85`	`85`	`],`
`86`		`- "timestamp": "2026-02-27T13:28:52.544137295",`
	`86`	`+ "timestamp": "2026-02-27T13:40:44.559269452",`
`87`	`87`	`"meta": {`
`88`	`88`	`"nf-test": "0.9.4:md5,3b1b0b457e32f7b2c51c0cf5658dd1cf",`
`89`	`89`	`"nextflow": "26.01.1"`
`@@ -108,12 +108,12 @@`
`108`	`108`	`[`
`109`	`109`	`"PARAPHRASE",`
`110`	`110`	`"paraphrase",`
`111`		`- "paraphrase 0.2.0"`
	`111`	`+ "0.2.0"`
`112`	`112`	`]`
`113`	`113`	`]`
`114`	`114`	`}`
`115`	`115`	`],`
`116`		`- "timestamp": "2026-02-27T13:29:06.479213928",`
	`116`	`+ "timestamp": "2026-02-27T13:40:58.558739068",`
`117`	`117`	`"meta": {`
`118`	`118`	`"nf-test": "0.9.4:md5,3b1b0b457e32f7b2c51c0cf5658dd1cf",`
`119`	`119`	`"nextflow": "26.01.1"`
`@@ -138,12 +138,12 @@`
`138`	`138`	`[`
`139`	`139`	`"PARAPHRASE",`
`140`	`140`	`"paraphrase",`
`141`		`- "paraphrase 0.2.0"`
	`141`	`+ "0.2.0"`
`142`	`142`	`]`
`143`	`143`	`]`
`144`	`144`	`}`
`145`	`145`	`],`
`146`		`- "timestamp": "2026-02-27T13:28:59.506106995",`
	`146`	`+ "timestamp": "2026-02-27T13:40:51.544118803",`
`147`	`147`	`"meta": {`
`148`	`148`	`"nf-test": "0.9.4:md5,3b1b0b457e32f7b2c51c0cf5658dd1cf",`
`149`	`149`	`"nextflow": "26.01.1"`
`@@ -168,12 +168,12 @@`
`168`	`168`	`[`
`169`	`169`	`"PARAPHRASE",`
`170`	`170`	`"paraphrase",`
`171`		`- "paraphrase 0.2.0"`
	`171`	`+ "0.2.0"`
`172`	`172`	`]`
`173`	`173`	`]`
`174`	`174`	`}`
`175`	`175`	`],`
`176`		`- "timestamp": "2026-02-27T13:28:45.395866251",`
	`176`	`+ "timestamp": "2026-02-27T13:40:37.597570496",`
`177`	`177`	`"meta": {`
`178`	`178`	`"nf-test": "0.9.4:md5,3b1b0b457e32f7b2c51c0cf5658dd1cf",`
`179`	`179`	`"nextflow": "26.01.1"`