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Save BAM index file #71

@ewels

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@ewels

From @ewels on June 23, 2017 9:4

We create a BAM index file during the RSeQC step, but don't save it to results. It would probably be better to move this index generation step to an earlier process (or a new process) and save it to results.

Copied from original issue: SciLifeLab#134

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