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For umitools use only umi_dedup.sorted.log in multiqc_report#1571

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pinin4fjords merged 6 commits into
nf-core:devfrom
idot:mqc_umitools_genomic_only
Aug 13, 2025
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For umitools use only umi_dedup.sorted.log in multiqc_report#1571
pinin4fjords merged 6 commits into
nf-core:devfrom
idot:mqc_umitools_genomic_only

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@idot
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@idot idot commented Jun 17, 2025

fixes #1570 by ignoring umi_dedup.transcriptome.sorted.log
I choose umi_dedup.sorted.log because the numbers are the most relatable ones with the input read counts

If you really would want to display also the values of umi_dedup.transcriptome.sorted.log you would have to change the sample pattern mask

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This looks good, thank you @idot

@pinin4fjords pinin4fjords added this to the 3.20.0 milestone Aug 13, 2025
@pinin4fjords pinin4fjords enabled auto-merge August 13, 2025 15:54
@pinin4fjords pinin4fjords linked an issue Aug 13, 2025 that may be closed by this pull request
@pinin4fjords pinin4fjords changed the title issue #1570 show only umi_dedup.sorted.log in multiqc report Show only umi_dedup.sorted.log in multiqc report Aug 13, 2025
@pinin4fjords pinin4fjords changed the title Show only umi_dedup.sorted.log in multiqc report For umitools use only umi_dedup.sorted.log in multiqc_report Aug 13, 2025
@pinin4fjords pinin4fjords merged commit 00364d0 into nf-core:dev Aug 13, 2025
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mixture of umi stats in multiqc report

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