Hi, after my `sarek` runs aborted due to what looked like an issue with `singularity` autoMounts, I figured this line in `nextflow.config` https://github.com/nf-core/sarek/blob/508735eb09d2fe33e904516db8db128b0a808dd2/nextflow.config#L118 should either be `singularity.autoMounts = true` or put in a scope. Hope this helps. Federico
Hi,
after my
sarekruns aborted due to what looked like an issue withsingularityautoMounts, I figured this line innextflow.configsarek/nextflow.config
Line 118 in 508735e
should either be
singularity.autoMounts = trueor put in a scope.Hope this helps.
Federico