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update modules

Status: Closed (abandoned).

nf-core/sareknumber 671

#671 In nf-core/sarek;

· by maxulysse was closed on Jul 25, 2022

Md cram

Status: Merged (completed).

nf-core/sareknumber 735

#735 In nf-core/sarek;

· by FriederikeHanssen was closed on Oct 12, 2022

Add script for the CreateSomaticPanelOfNormals workflow

enhancementNew feature or requestNew feature or request

Status: Closed (completed).

#149 In nf-core/sarek;

· by cgpu was closed on Nov 9, 2021

[FEATURE] Investigate Fastp usage for speed improvement

enhancementNew feature or requestNew feature or request

Status: Closed (completed).

#508 In nf-core/sarek;

· by FriederikeHanssen was closed on Jun 24, 2022

Select only somatic/germline[FEATURE]

enhancementNew feature or requestNew feature or request

Status: Closed (completed).

#509 In nf-core/sarek;

· by jgarces02 was closed on May 11, 2022

Can't download VEP cache from behind proxy [BUG]

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

Status: Not planned (skipped).

#441 In nf-core/sarek;

· by pappewaio was closed on Aug 26, 2022

Freebays intermediate files are published

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#680 In nf-core/sarek;

· by maxulysse was closed on Jul 25, 2022

[FEATURE]: VEP output configuration to get the results in tab format instead of VCF

enhancementNew feature or requestNew feature or request

Status: Closed (completed).

#575 In nf-core/sarek;

· by IndhuPS was closed on Jun 17, 2022

A USER ERROR has occurred: Bad input: Sample $name is not in BAM header: [...]

Status: Closed (completed).

#732 In nf-core/sarek;

· by petanska was closed on Nov 2, 2022