--save_bam_mapped works for every settings

[maxulysse]

nf-core/sarek pull request

it was working only for minimal settings before, it's now enabled for every settings

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Please fill in the appropriate checklist below (delete whatever is not relevant).
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• This comment contains a description of changes (with reason)
• If you've fixed a bug or added code that should be tested, add tests!
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[ggabernet]

Looks good to me! Oups, I had also missed the publish_dir_mode in my last review...