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Fix Control freec restart issue#229

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maxulysse merged 2 commits intonf-core:devfrom
maxulysse:Control-FREEC
Jul 13, 2020
Merged

Fix Control freec restart issue#229
maxulysse merged 2 commits intonf-core:devfrom
maxulysse:Control-FREEC

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@maxulysse
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nf-core/sarek pull request

Many thanks for contributing to nf-core/sarek!

Please fill in the appropriate checklist below (delete whatever is not relevant).
These are the most common things requested on pull requests (PRs).

PR checklist

  • This comment contains a description of changes (with reason)
  • If you've fixed a bug or added code that should be tested, add tests!
  • If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repo
  • Ensure the test suite passes (nextflow run . -profile test,docker).
  • Make sure your code lints (nf-core lint .).
  • Documentation in docs is updated
  • CHANGELOG.md is updated
  • README.md is updated

Learn more about contributing: CONTRIBUTING.md

@maxulysse
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╰─≻nextflow run . -profile docker,test --step ControlFREEC --input sample.tsv 
N E X T F L O W  ~  version 20.05.0-edge
Launching `./main.nf` [happy_swirles] - revision: 3a5d3ede3a
WARN: Unknown parameter: c
Unknown tool(s), see --help for more information
╰─≻nextflow run . -profile docker,test --step ControlFREEC --input sample.tsv
N E X T F L O W  ~  version 20.05.0-edge
Launching `./main.nf` [kickass_colden] - revision: c47cacde67
----------------------------------------------------
                                        ,--./,-.
        ___     __   __   __   ___     /,-._.--~'
  |\ | |__  __ /  ` /  \ |__) |__         }  {
  | \| |       \__, \__/ |  \ |___     \`-._,-`-,
                                        `._,._,'
    ____
  .´ _  `.
 /  |\`-_ \      __        __   ___     
|   | \  `-|    |__`  /\  |__) |__  |__/
 \ |   \  /     .__| /¯¯\ |  \ |___ |  \
  `|____\´

  nf-core/sarek v3.0dev
----------------------------------------------------
...

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@ggabernet ggabernet left a comment

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Looks good!

@maxulysse maxulysse assigned maxulysse and unassigned maxulysse Jul 13, 2020
@maxulysse maxulysse merged commit 8c4e8d3 into nf-core:dev Jul 13, 2020
@maxulysse maxulysse deleted the Control-FREEC branch July 23, 2020 12:48
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2 participants