Skip to content

fix: cf_ploidy type parameter #381

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
maxulysse merged 2 commits into from
May 27, 2021
Merged

fix: cf_ploidy type parameter #381

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
29dae29
fix: cf_ploidy type parameter
maxulysse May 27, 2021
8951221
fix: cf_ploidy type
maxulysse May 27, 2021
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion nextflow.config
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -52,7 +52,7 @@ params {
cf_coeff = 0.05 // default value for Control-FREEC
cf_contamination = null // by default not specified in Control-FREEC
cf_contamination_adjustment = null // by default we are not using this in Control-FREEC
cf_ploidy = "2" // you can use 2,3,4
cf_ploidy = 2 // you can use 2,3,4
cf_window = null // by default we are not using this in Control-FREEC
generate_gvcf = null // g.vcf are not produced by HaplotypeCaller by default
no_strelka_bp = null // Strelka will use Manta candidateSmallIndels if available
Expand Down
2 changes: 1 addition & 1 deletion nextflow_schema.json
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -295,7 +295,7 @@
"description": "Design known contamination value for Control-FREEC"
},
"cf_ploidy": {
"type": "string",
"type": "number",
"default": "2",
"fa_icon": "fas fa-wrench",
"description": "Overwrite Control-FREEC ploidy"
Expand Down
⚡