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2 changes: 1 addition & 1 deletion .github/workflows/ci.yml
Original file line number Diff line number Diff line change
Expand Up @@ -126,7 +126,7 @@ jobs:
- name: Pull docker image
run: docker pull nfcore/sarek:dev
- name: Run test for minimal genomes
run: nextflow run ${GITHUB_WORKSPACE} -profile test,docker --skipQC all --genome ${{ matrix.genome }} ${{ matrix.intervals }} --tools Manta,mpileup,Strelka,FreeBayes
run: nextflow run ${GITHUB_WORKSPACE} -profile test,docker --skip_qc all --genome ${{ matrix.genome }} ${{ matrix.intervals }} --tools Manta,mpileup,Strelka,FreeBayes

profile:
env:
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