Flag ignored processes at end of run

[ewels]

From @ewels on August 8, 2018 9:31

Normally, ignored tasks are a bad thing in nf-core pipelines. It would be good to add some template code that flags a big warning when pipelines finish if any tasks errored and were ignored.

Copied from original issue: nf-core/cookiecutter#58

[ewels]

This is how it's done in Sarek: https://github.com/SciLifeLab/Sarek/blob/master/main.nf#L938-L948

Also flag how many processes succeeded etc.

[maxulysse]

You probably want a permalink to the real location:
https://github.com/SciLifeLab/Sarek/blob/9cc744b51478c091681b1df26bf813b13d48fb37/main.nf#L938-L948

[apeltzer]

Resolved in #302