iGenomes paths wrong for GRCm38

[drpatelh]

These lines should point to GRCm38 and not GRCh37! Does this require a patch? If it isnt spotted by the pipeline developer it could lead to issues. Hopefully, the pipeline fails because the annotation files arent consistent but possibly not worth the risk...

tools/nf_core/pipeline-template/{{cookiecutter.name_noslash}}/conf/igenomes.config

Lines 27 to 28 in 2e2fe8e

	bowtie2 = "${params.igenomes_base}/Mus_musculus/Ensembl/GRCh37/Sequence/Bowtie2Index/"
	bwa = "${params.igenomes_base}/Mus_musculus/Ensembl/GRCh37/Sequence/BWAIndex/"

[apeltzer]

Just double-checked and it should at least fail:

ls -l /nfsmounts/igenomes/Mus_musculus/Ensembl
GRCm38
NCBIM37

Still bad as it will not work, but we should definitely patch this asap!

[apeltzer]

see #419 for a PR