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    9 repositories

    • encode-202006-jamboree-detrout-rna-sc-pipeline

      Public
      My efforts at getting the single cell RNA seq pipelines to run
      Jupyter Notebook
      •0•1•0•0•Updated Feb 27, 2024Feb 27, 2024

    • single_cell_annotation

      Public
      Python
      •2•0•0•2•Updated Nov 22, 2022Nov 22, 2022

    • mpra_starr_qc

      Public
      QC pipeline for MPRA and STARR-seq experiments
      R
      •
      MIT License
      •2•0•0•0•Updated May 17, 2021May 17, 2021

    • tss-annotation

      Public
      Python
      •2•0•0•0•Updated Apr 16, 2021Apr 16, 2021

    • nawg_distal_reg_enhancer_synergy

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 12, 2020Jun 12, 2020

    • scrna-count-analysis

      Public
      Notebooks to analyze scRNA count matrices
      Jupyter Notebook
      •0•0•0•0•Updated Jun 12, 2020Jun 12, 2020

    • locusselect_applications

      Public
      wrapper scripts, examples, jupyter notebooks for locusselect project. The locusselect repo contains the core functional python scripts needed for locus selectio…
      Jupyter Notebook
      •0•0•0•0•Updated Jun 11, 2020Jun 11, 2020

    • locusselect

      Public
      extraction of data embeddings from deep learning model layers; computation of embedding distance and visualization with umap/tsne
      Jupyter Notebook
      •1•0•0•0•Updated Jun 8, 2020Jun 8, 2020

    • HiCSampler

      Public
      Python
      •5•0•0•0•Updated Jun 7, 2020Jun 7, 2020
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