Repositories list

• PM566-bots

  Public
  11 fork•00 stars•00 issues•00 pull requests•Updated Apr 13, 2026Apr 13, 2026

• lsReg

  Public
  C++

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 7, 2026Apr 7, 2026

• LUCIDus

  Public
  the new version of LUCID

  R

  •55 forks•77 stars•33 issues•00 pull requests•Updated Apr 7, 2026Apr 7, 2026

• BinaryDosage

  Public
  Converts VCF files to a binary format

  R

  •22 forks•11 star•22 issues•00 pull requests•Updated Apr 7, 2026Apr 7, 2026

• PM520

  Public
  PM520 Advanced Statistical Computing

  statistical-computingjax

  statistical-computingjax

  Jupyter Notebook

  •55 forks•1616 stars•00 issues•00 pull requests•Updated Apr 3, 2026Apr 3, 2026

• Annoq_Overrepr_Workflow

  Public
  A workflow to query Annoq and run the overrepresentation

  TypeScript

  •22 forks•00 stars•33 issues•00 pull requests•Updated Apr 3, 2026Apr 3, 2026

• .github

  Public
  Will contain details for our organization's landing page

  00 forks•00 stars•00 issues•00 pull requests•Updated Mar 26, 2026Mar 26, 2026

• Phenotypic_plasticity

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Mar 24, 2026Mar 24, 2026

• annoq-api-v2

  Public
  Python

  •11 fork•00 stars•66 issues•00 pull requests•Updated Mar 19, 2026Mar 19, 2026

• software-dev

  Public
  Coding Standards for the USC Biostats group

  rhpcreproducible-research+ 2

  rhpcreproducible-researchstandardsreproducibility

  HTML

  •88 forks•3636 stars•00 issues•11 pull request•Updated Mar 18, 2026Mar 18, 2026

• LUCIDus3

  Public
  LUCID version 3, a major update and enhancement from the original release, implements different integration strategies for multi-omics data with multiple layers…

  HTML

  •

  Other

  •00 forks•11 star•00 issues•00 pull requests•Updated Mar 16, 2026Mar 16, 2026

• annoq-site

  Public
  TypeScript

  •22 forks•00 stars•1818 issues•11 pull request•Updated Mar 13, 2026Mar 13, 2026

• annoq-data-builder

  Public
  Shell

  •00 forks•00 stars•22 issues•00 pull requests•Updated Mar 11, 2026Mar 11, 2026

• annoq-database

  Public
  Python

  •00 forks•00 stars•22 issues•00 pull requests•Updated Mar 11, 2026Mar 11, 2026

• PM516

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Mar 7, 2026Mar 7, 2026

• barry

  Public
  barry: Your go-to motif accountant

  graphmotifenumeration+ 4

  graphmotifenumerationergmexponential-familycounting-statisticschange-statistics

  C++

  •

  MIT License

  •00 forks•88 stars•22 issues•11 pull request•Updated Mar 4, 2026Mar 4, 2026

• annoq-py

  Public
  Python package for annoq-api-v2

  Python

  •

  MIT License

  •22 forks•00 stars•00 issues•00 pull requests•Updated Mar 2, 2026Mar 2, 2026

• AnnoQR

  Public
  R client wrap for AnnoQ API

  R

  •

  MIT License

  •33 forks•22 stars•44 issues•00 pull requests•Updated Mar 2, 2026Mar 2, 2026

• LAsBEST

  Public
  Repository of USC's LA's BEST program. https://lasbest.usc.edu/

  trainingeducationdatascience+ 4

  trainingeducationdatasciencebiostatisticsrstatsrprogrammingnih

  HTML

  •66 forks•33 stars•11 issue•00 pull requests•Updated Feb 20, 2026Feb 20, 2026

• PRSfromPGS

  Public
  R

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 19, 2026Feb 19, 2026

• annoq-api

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 11, 2026Feb 11, 2026

• dnam-roi

  Public
  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 15, 2026Jan 15, 2026

• aphylo

  Public
  Statistical inference of genetic functions in phylogenetic trees

  rannotationsinference+ 3

  rannotationsinferencephylogeneticsr-packagercpparmadillo

  R

  •

  Other

  •22 forks•66 stars•88 issues•00 pull requests•Updated Jan 14, 2026Jan 14, 2026

• xrnet

  Public
  R Package for Hierarchical Regularized Regression to Incorporate External Data

  R

  •33 forks•1010 stars•22 issues•00 pull requests•Updated Dec 17, 2025Dec 17, 2025

• fmcmc

  Public
  A friendly MCMC framework

  rparallel-computingbayesian-inference+ 5

  rparallel-computingbayesian-inferenceadaptiver-packagemcmcmarkov-chain-monte-carlometropolis-hastings

  R

  •

  Other

  •77 forks•1616 stars•77 issues•11 pull request•Updated Dec 13, 2025Dec 13, 2025

• barryr

  Public
  R bindings for the barry C++ library, your go-to motif accountant

  statisticsrstatsr-package+ 3

  statisticsrstatsr-packager-programmingr-librarymotifs

  C++

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 9, 2025Dec 9, 2025

• PM566

  Public
  USC's Introduction to Health Data Science

  data-sciencemachine-learningcourse+ 5

  data-sciencemachine-learningcoursedatavizcourse-materialsdatasciencerstatswebscraping

  R

  •2929 forks•1717 stars•1616 issues•00 pull requests•Updated Nov 26, 2025Nov 26, 2025

• ReadVCF

  Public
  R package to quickly read VCF files. The packages requires the Bioconductor package rhtslib to compile.

  C++

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 4, 2025Nov 4, 2025

• PM566-whoami

  Public
  152152 forks•00 stars•00 issues•00 pull requests•Updated Sep 19, 2025Sep 19, 2025

• rbootcamp

  Public
  R boot camp: Scientific Computing

  educationtutorialr+ 2

  educationtutorialrsimulationscientific-computing

  HTML

  •1616 forks•2929 stars•55 issues•00 pull requests•Updated Aug 21, 2025Aug 21, 2025