Repositories list

• imputationserver2

  Public
  Imputation Server 2 workflow to facilitate genotype imputation at scale.

  Nextflow

  •

  MIT License

  •1515 forks•4848 stars•22 issues•11 pull request•Updated May 7, 2026May 7, 2026

• umi-pipeline-nf

  Public
  Nextflow pipeline to analyze ONT-UMI-Sequencing data

  Python

  •

  Mozilla Public License 2.0

  •77 forks•1313 stars•00 issues•11 pull request•Updated May 6, 2026May 6, 2026

• vntr-calling-nf

  Public
  HTML

  •

  MIT License

  •33 forks•55 stars•11 issue•11 pull request•Updated Dec 16, 2025Dec 16, 2025

• imputationserver-utils

  Public
  Java

  •

  MIT License

  •44 forks•22 stars•00 issues•00 pull requests•Updated Nov 27, 2025Nov 27, 2025

• mtdna-server-2

  Public
  mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes

  Nextflow

  •

  MIT License

  •55 forks•2222 stars•99 issues•00 pull requests•Updated Nov 13, 2025Nov 13, 2025

• michigan-imputationserver

  Public
  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Nov 4, 2025Nov 4, 2025

• imputation-and-pgs-tutorial

  Public
  TeX

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 14, 2025Oct 14, 2025

• nf-gwas

  Public
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.

  gwasnextflowslurm+ 3

  gwasnextflowslurmsingularityimputationregenie

  Nextflow

  •

  MIT License

  •2828 forks•8282 stars•99 issues•00 pull requests•Updated Oct 7, 2025Oct 7, 2025

• genomic-utils

  Public
  Collection of tools to work with genomic datasets

  Java

  •

  MIT License

  •11 fork•33 stars•11 issue•00 pull requests•Updated Oct 7, 2025Oct 7, 2025

• cloudgene3

  Public
  A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.

  Java

  •

  MIT License

  •99 forks•1717 stars•44 issues•11 pull request•Updated Sep 6, 2025Sep 6, 2025

• pre-imputation-qc

  Public
  Prepare your data for Genotype Imputation

  Nextflow

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 22, 2025Aug 22, 2025

• haplogrep3

  Public
  Free mtDNA Haplogroup Classification Service

  Java

  •

  MIT License

  •66 forks•3232 stars•99 issues•00 pull requests•Updated Jul 3, 2025Jul 3, 2025

• ngs-class

  Public
  Next Gen Sequencing Course - Medical University of Innsbruck

  Nextflow

  •00 forks•22 stars•00 issues•00 pull requests•Updated Apr 30, 2025Apr 30, 2025

• apps-cloudgene-io

  Public
  Source of http://apps.cloudgene.io

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 11, 2025Apr 11, 2025

• mitoverse

  Public
  Documentation for the Mitoverse Platform

  HTML

  •00 forks•22 stars•00 issues•00 pull requests•Updated Dec 29, 2024Dec 29, 2024

• imputationserver

  Public
  Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and prod…

  gwasimputationminimac4+ 1

  gwasimputationminimac4software-as-a-service

  Java

  •

  GNU Affero General Public License v3.0

  •4949 forks•8585 stars•4646 issues•00 pull requests•Updated Sep 28, 2024Sep 28, 2024

• cloudgene-website

  Public
  Cloudgene Website

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 1, 2024Aug 1, 2024

• microarray-eval-nf

  Public
  Nextflow

  •22 forks•00 stars•00 issues•11 pull request•Updated Jul 17, 2024Jul 17, 2024

• cloudgene3-installer

  Public
  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 15, 2024Jul 15, 2024

• cloudgene

  Public
  A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.

  dockerhadoopanalysis-pipeline+ 2

  dockerhadoopanalysis-pipelinecloudgenecloudgene-saas

  Java

  •

  GNU Affero General Public License v3.0

  •2020 forks•3939 stars•2222 issues•66 pull requests•Updated Apr 19, 2024Apr 19, 2024

• r-repo-test

  Public
  A R test repo

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 20, 2024Mar 20, 2024

• imputationserver-ashg

  Public
  Michigan Imputation Server Workshop

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 2, 2023Nov 2, 2023

• cloudgene-installer

  Public
  Cloudgene Installation script.

  Shell

  •11 fork•00 stars•00 issues•00 pull requests•Updated Sep 20, 2023Sep 20, 2023

• haplocheck

  Public
  Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies

  HTML

  •

  MIT License

  •22 forks•1717 stars•44 issues•11 pull request•Updated Jun 14, 2023Jun 14, 2023

• mt-c1

  Public
  Functionally relevant mutation sites in the human mitochondrial respiratory complex 1 (MT-C1)

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 16, 2023May 16, 2023

• cloudgene-sdk

  Public
  SDKs for Cloudgene

  Java

  •00 forks•00 stars•00 issues•11 pull request•Updated May 14, 2023May 14, 2023

• haplogrep-core

  Public
  haplogrep-core

  Java

  •

  Apache License 2.0

  •00 forks•00 stars•11 issue•00 pull requests•Updated Apr 27, 2023Apr 27, 2023

• haplogrep-trees

  Public
  HTML

  •

  MIT License

  •00 forks•33 stars•00 issues•00 pull requests•Updated Mar 29, 2023Mar 29, 2023

• phylotree-fu-rcrs

  Public
  HTML

  •

  MIT License

  •00 forks•33 stars•00 issues•00 pull requests•Updated Mar 29, 2023Mar 29, 2023

• phylotree-rcrs-17

  Public
  HTML

  •

  MIT License

  •00 forks•44 stars•00 issues•00 pull requests•Updated Mar 29, 2023Mar 29, 2023