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@mrc-ide MRC Centre for Global Infectious Disease Analysis

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    579 repositories

    • EpiEstim

      Public
      A tool to estimate time varying instantaneous reproduction number during epidemics
      R
      •40•103•57•3•Updated May 3, 2026May 3, 2026

    • climate_norovirus_litreview

      Public
      R
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated May 2, 2026May 2, 2026

    • YellowFeverDynamics

      Public
      C++
      •
      MIT License
      •0•1•0•0•Updated May 1, 2026May 1, 2026

    • monty

      Public
      Monte Carlo Models :goat:
      R
      •
      Other
      •2•7•12•4•Updated May 1, 2026May 1, 2026

    • priority-pathogens

      Public
      https://mrc-ide.github.io/priority-pathogens/
      R
      •
      Creative Commons Zero v1.0 Universal
      •2•10•21•4•Updated May 1, 2026May 1, 2026

    • Delfino

      Public
      Delfino: Trajectory-Based Epidemiological Simulation
      Jupyter Notebook
      •
      MIT License
      •112•0•0•0•Updated May 1, 2026May 1, 2026

    • datefixer

      Public
      R
      •
      Other
      •0•1•0•1•Updated May 1, 2026May 1, 2026

    • datefixer-analysis

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated May 1, 2026May 1, 2026

    • odin-monty

      Public
      R
      •1•3•4•0•Updated Apr 30, 2026Apr 30, 2026

    • malariasimple

      Public
      C++
      •
      Other
      •3•0•0•2•Updated Apr 28, 2026Apr 28, 2026

    • public-events-zombie-sim2-java

      Public
      Java
      •0•0•0•0•Updated Apr 28, 2026Apr 28, 2026

    • backsearchr

      Public
      R
      •
      Other
      •0•0•0•0•Updated Apr 28, 2026Apr 28, 2026

    • packit

      Public
      Web app for serving outpack and/or orderly2 metadata
      TypeScript
      •
      MIT License
      •1•1•0•2•Updated Apr 28, 2026Apr 28, 2026

    • GRFFmap

      Public
      HTML
      •
      Other
      •0•0•0•0•Updated Apr 27, 2026Apr 27, 2026

    • naomi.zaf

      Public
      Naomi model for subnational HIV estimation -- South Africa district estimates version
      R
      •
      Other
      •10•0•0•0•Updated Apr 27, 2026Apr 27, 2026

    • mint-v2

      Public
      Malaria intervention tool V2
      TypeScript
      •0•0•0•0•Updated Apr 27, 2026Apr 27, 2026

    • PlasmoSim

      Public
      A basic Plasmodium simulator. Contains functions to simulate epidemiological and genetic data from a simple model of Plasmodium falciparum transmission.
      C++
      •
      MIT License
      •1•1•0•0•Updated Apr 25, 2026Apr 25, 2026

    • helios

      Public
      Simulating far UVC for pathogen control
      R
      •
      Other
      •2•8•21•4•Updated Apr 24, 2026Apr 24, 2026

    • PGEforge

      Public
      A community-driven resource for enhancing Plasmodium genomic epidemiology analysis
      JavaScript
      •
      MIT License
      •1•2•1•5•Updated Apr 24, 2026Apr 24, 2026

    • Dengue_TimorLeste

      Public
      Code to reproduce the analyses for sero-catalytic and spatial modeling of dengue force of infection (FOI) using clustered, age-stratified seroprevalence data fr…
      R
      •0•1•0•0•Updated Apr 24, 2026Apr 24, 2026

    • public-events-herd-immunity-mainapp

      Public
      The main Java app for the Herd Immunity (Bouncing Ball) game
      Java
      •0•0•0•0•Updated Apr 23, 2026Apr 23, 2026

    • orderly.runner

      Public
      Small HTTP server for running orderly reports
      R
      •
      Other
      •0•0•0•0•Updated Apr 21, 2026Apr 21, 2026

    • icl-hbv_v2

      Public
      Updated repository for the HBV model developed at Imperial College London
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Apr 21, 2026Apr 21, 2026

    • wodin

      Public
      odin on the web
      TypeScript
      •0•1•1•14•Updated Apr 20, 2026Apr 20, 2026

    • mpoxseir

      Public
      C++
      •
      Other
      •1•4•14•3•Updated Apr 17, 2026Apr 17, 2026

    • odin2

      Public
      R
      •
      Other
      •4•9•0•4•Updated Apr 17, 2026Apr 17, 2026

    • malariasimulation

      Public
      The malaria model
      R
      •
      Other
      •23•21•32•7•Updated Apr 16, 2026Apr 16, 2026

    • mrc-ide.r-universe.dev

      Public
      2•0•0•0•Updated Apr 14, 2026Apr 14, 2026

    • YEP

      Public
      A package for running a dynamic SEIRV model of yellow fever and inferring model parameters
      R
      •
      MIT License
      •1•0•0•0•Updated Apr 14, 2026Apr 14, 2026

    • YF_VIMC_Burden_Orderly

      Public
      Orderly framework for running VIMC yellow fever burden calculations using the YEP package
      R
      •0•1•0•0•Updated Apr 13, 2026Apr 13, 2026
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