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    82 repositories

    • gut-to-soil-tutorial

      Public
      The gut-to-soil axis microbiome analysis tutorial
      Makefile
      •4•1•3•1•Updated May 8, 2026May 8, 2026

    • q2-boots

      Public
      q2-boots: bootstrapped and rarefaction-based alpha and beta diversity analyses 🥾
      bootstrapbioinformaticsmicrobiome
      bootstrapbioinformaticsmicrobiomerarefactionqiime2
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•3•11•4•Updated May 8, 2026May 8, 2026

    • q2-cutadapt

      Public
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •18•4•5•1•Updated May 8, 2026May 8, 2026

    • resources

      Public
      Source for QIIME 2 Resources page.
      TeX
      •
      BSD 3-Clause "New" or "Revised" License
      •3•1•2•0•Updated May 8, 2026May 8, 2026

    • distributions

      Public
      Makefile
      •
      BSD 3-Clause "New" or "Revised" License
      •10•5•4•1•Updated May 8, 2026May 8, 2026

    • q2-metadata

      Public
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•3•6•1•Updated May 8, 2026May 8, 2026

    • q2-types

      Public
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •43•17•26•2•Updated May 8, 2026May 8, 2026

    • q2-mystery-stew

      Public
      This plugin exists to define integration tests between interfaces and the framework.
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•0•0•0•Updated May 8, 2026May 8, 2026

    • q2cli

      Public
      Command line interface for QIIME 2
      hacktoberfestq2interface
      hacktoberfestq2interface
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •29•20•12•2•Updated May 8, 2026May 8, 2026

    • q2templates

      Public
      Design template package for QIIME 2 Plugins
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •15•4•0•0•Updated May 8, 2026May 8, 2026

    • library

      Public
      A website for sharing QIIME 2 Plugins
      Svelte
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•3•2•Updated May 8, 2026May 8, 2026

    • q2-feature-classifier

      Public
      QIIME 2 plugin supporting taxonomic classification
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •40•20•9•1•Updated May 7, 2026May 7, 2026

    • amplicon-docs

      Public
      Source for QIIME 2 amplicon documentation.
      Makefile
      •2•2•6•0•Updated May 6, 2026May 6, 2026

    • homepage

      Public
      QIIME 2 Homepage
      Astro
      •
      MIT License
      •0•0•0•2•Updated May 4, 2026May 4, 2026

    • library-catalog

      Public
      Stores a list of the repos that are included in the QIIME 2 library
      BSD 3-Clause "New" or "Revised" License
      •10•0•1•1•Updated Apr 30, 2026Apr 30, 2026

    • q2view

      Public
      A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •3•1•2•0•Updated Apr 30, 2026Apr 30, 2026

    • moving-pictures-tutorial

      Public
      Moving Pictures Tutorial source
      Makefile
      •1•0•0•0•Updated Apr 24, 2026Apr 24, 2026

    • action-library-packaging

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•0•0•0•Updated Apr 21, 2026Apr 21, 2026

    • midpoint_check

      Public
      Python
      •0•0•0•0•Updated Apr 17, 2026Apr 17, 2026

    • q2

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 16, 2026Apr 16, 2026

    • q2-longitudinal

      Public
      QIIME 2 plugin for paired sample comparisons
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•9•28•1•Updated Apr 16, 2026Apr 16, 2026

    • q2-sapienns

      Public
      hacktoberfestqiime2-plugin
      hacktoberfestqiime2-plugin
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•1•0•Updated Apr 16, 2026Apr 16, 2026

    • q2-vizard

      Public
      The first choice of wizard lizards for interactive, generalized microbiome data visualization!
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •13•1•8•2•Updated Apr 16, 2026Apr 16, 2026

    • q2-phylogeny

      Public
      Phylogenetic reconstruction, and operations on phylogenetic trees.
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •20•5•2•0•Updated Apr 16, 2026Apr 16, 2026

    • q2-dada2

      Public
      QIIME 2 plugin wrapping DADA2
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •40•24•11•3•Updated Apr 16, 2026Apr 16, 2026

    • q2-alignment

      Public
      Support for multiple sequence alignment in QIIME 2.
      hacktoberfest
      hacktoberfest
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •23•2•6•1•Updated Apr 16, 2026Apr 16, 2026

    • q2-quality-filter

      Public
      Quality filtering for QIIME2
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •14•1•3•0•Updated Apr 16, 2026Apr 16, 2026

    • q2-taxa

      Public
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •30•3•43•2•Updated Apr 16, 2026Apr 16, 2026

    • q2-demux

      Public
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •20•1•9•1•Updated Apr 16, 2026Apr 16, 2026

    • q2-diversity

      Public
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •44•3•44•1•Updated Apr 16, 2026Apr 16, 2026
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