Repositories list

• virprof

  Public
  Pipeline for recovering and quantifying non-host genomes from RNA-seq

  Python

  •

  GNU General Public License v3.0

  •00 forks•11 star•1515 issues•00 pull requests•Updated Nov 21, 2025Nov 21, 2025

• primero-viral-illness

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Feb 27, 2025Feb 27, 2025

• ITLN1_paper

  Public
  This repository contains code for generating figures in the Nature Communications paper, "A common polymorphism in the Intelectin-1 gene influences mucus pluggi…

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 4, 2024Apr 4, 2024

• Nasal_TWAS

  Public
  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 25, 2022Jan 25, 2022

• SingleCell_IL13

  Public
  Code for the paper, "Single cell and population transcriptomics reveal pan-epithelial remodeling in type 2-high asthma"

  R

  •11 fork•33 stars•00 issues•11 pull request•Updated Nov 1, 2021Nov 1, 2021

• ACE2_TMPRSS2_Airway

  Public
  Code repository for the manuscript entitled "Type 2 and interferon inflammation strongly regulate SARS-CoV-2 related gene expression in the airway epithelium"

  R

  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 13, 2020Aug 13, 2020

• AirPol2020

  Public
  Code repository for the manuscript entitled "Genome-wide analysis reveals mucociliary remodeling of the airway epithelium induced by urban PM2.5" submitted to A…

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 5, 2020Feb 5, 2020

• SingleCell_smoking

  Public
  Code used for the paper: "Dissecting the cellular specificity of smoking effects and reconstructing lineages in the human airway epithelium"

  R

  •33 forks•33 stars•00 issues•00 pull requests•Updated Dec 9, 2019Dec 9, 2019