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    6 repositories

    • spacegraphcats

      Public
      Indexing & querying large assembly graphs -- in space, no one can hear you miao!
      bioinformaticsmetagenomicsk-mers
      bioinformaticsmetagenomicsk-mers
      Standard ML
      •
      Other
      •15•118•107•14•Updated Jan 29, 2026Jan 29, 2026

    • spacegraphcats-dory-example

      Public
      An example spacegraphcats project!
      2•0•0•0•Updated Oct 23, 2023Oct 23, 2023

    • 2018-paper-spacegraphcats

      Public
      Paper text and pipeline for "Exploring neighborhoods in large metagenome assembly graphs..."
      Jupyter Notebook
      •1•4•2•1•Updated Jun 17, 2021Jun 17, 2021

    • spacegraphcats.github.io

      Public
      top level pages
      HTML
      •0•0•0•0•Updated May 20, 2021May 20, 2021

    • spacegraphcats-twofoo-example

      Public
      A small-but-real-ish example of spacegraphcats on a mock metagenome.
      Python
      •0•0•0•0•Updated Mar 21, 2021Mar 21, 2021

    • cats-in-practice-pipeline

      Public
      Paper pipeline for cats-in-practice paper.
      Standard ML
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•1•Updated May 24, 2017May 24, 2017
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