CRAN issues

[osorensen]

The following issues have appeared after the package got released to CRAN.

Dear maintainer,

Please see the problems shown on
https://cran.r-project.org/web/checks/check_results_BayesMallowsSMC2.html.

Please correct before 2026-02-18 to safely retain your package on CRAN.

Do remember to look at the 'Additional issues'.

The CRAN Team

Here is a summary:

• On r-oldrel-macos

checking tests ... [7s/7s] ERROR
Running ‘testthat.R’ [7s/7s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:

This file is part of the standard setup for testthat.

It is recommended that you do not modify it.

Where should you do additional test configuration?

Learn more about the roles of various files in:

* https://r-pkgs.org/testing-design.html#sec-tests-files-overview

* https://testthat.r-lib.org/articles/special-files.html

library(testthat)
library(BayesMallowsSMC2)

test_check("BayesMallowsSMC2")
Saving _problems/test-compute_sequentially_partial-11.R
BayesMallowsSMC2 Model
======================

Number of particles: 100
Number of timepoints: 100
Number of items: 5
Number of clusters: 1

Log marginal likelihood: -472.34
Final ESS: 63.55
Resampling events: 5/100
BayesMallowsSMC2 Model

Number of particles: 100
Number of timepoints: 100
Number of items: 5
Number of clusters: 1

Log marginal likelihood: -472.34
Final ESS: 63.55
Resampling events: 5/100
BayesMallowsSMC2 Model

Number of particles: 50
Number of timepoints: 100
Number of items: 5
Number of clusters: 1

Log marginal likelihood: -445.30
Final ESS: 35.39
Resampling events: 4/100
BayesMallowsSMC2 Model Summary

Number of particles: 100
Number of timepoints: 100
Number of items: 5
Number of clusters: 1

Log marginal likelihood: -472.34
Final ESS: 63.55
Resampling events: 5/100

Posterior Statistics for Alpha:

Cluster 1: Mean = 0.0359, SD = 0.0238
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 111 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_sequentially_partial.R:11:3'): compute_sequentially works with partial data ──
Expected alpha_hat > 0.06.
Actual comparison: 0.046 <= 0.060
Difference: -0.014 <= 0

[ FAIL 1 | WARN 0 | SKIP 0 | PASS 111 ]
Error:
! Test failures.
Execution halted
checking PDF version of manual ... [2s/2s] OK
DONE
Status: 1 ERROR, 1 NOTE

• on noLD:

• checking tests ...
  Running ‘testthat.R’ [56s/67s]
  [56s/68s] ERROR
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:

  This file is part of the standard setup for testthat.

  It is recommended that you do not modify it.

  Where should you do additional test configuration?

  Learn more about the roles of various files in:

  * https://r-pkgs.org/testing-design.html#sec-tests-files-overview

  * https://testthat.r-lib.org/articles/special-files.html

  library(testthat)
  library(BayesMallowsSMC2)

  test_check("BayesMallowsSMC2")
  Saving _problems/test-compute_sequentially_partial-11.R
  BayesMallowsSMC2 Model
  ======================

  Number of particles: 100
  Number of timepoints: 100
  Number of items: 5
  Number of clusters: 1

  Log marginal likelihood: -472.34
  Final ESS: 63.55
  Resampling events: 5/100
  BayesMallowsSMC2 Model

  Number of particles: 100
  Number of timepoints: 100
  Number of items: 5
  Number of clusters: 1

  Log marginal likelihood: -472.34
  Final ESS: 63.55
  Resampling events: 5/100
  BayesMallowsSMC2 Model

  Number of particles: 50
  Number of timepoints: 100
  Number of items: 5
  Number of clusters: 1

  Log marginal likelihood: -445.30
  Final ESS: 35.39
  Resampling events: 4/100
  BayesMallowsSMC2 Model Summary

  Number of particles: 100
  Number of timepoints: 100
  Number of items: 5
  Number of clusters: 1

  Log marginal likelihood: -472.34
  Final ESS: 63.55
  Resampling events: 5/100

  Posterior Statistics for Alpha:

  Cluster 1: Mean = 0.0359, SD = 0.0238
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 111 ]

  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-compute_sequentially_partial.R:11:3'): compute_sequentially works with partial data ──
  Expected alpha_hat > 0.06.
  Actual comparison: 0.046 <= 0.060
  Difference: -0.014 <= 0

  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 111 ]
  Error:
  ! Test failures.
  Execution halted