Topological sorts in memory rather than in files

[osorensen]

No description provided.

[Copilot]

Copilot reviewed 8 out of 15 changed files in this pull request and generated no comments.

Files not reviewed (7)

• R/RcppExports.R: Language not supported
• R/compute_sequentially.R: Language not supported
• man/compute_sequentially.Rd: Language not supported
• man/precompute_topological_sorts.Rd: Language not supported
• tests/testthat/test-all_topological_sorts.R: Language not supported
• tests/testthat/test-compute_sequentially_partial.R: Language not supported
• tests/testthat/test-compute_sequentially_preferences.R: Language not supported

Comments suppressed due to low confidence (2)

src/typedefs.h:19

• [nitpick] Consider adding a brief comment clarifying that 'sort_matrices_tp' represents in-memory topological sort matrices to distinguish it from the previous file-based implementation.

using sort_matrices_tp = std::map<std::string, arma::umat>;

src/data.cpp:71

• Ensure that the value from 'a[i]' is appropriately cast to a long long int (or the desired numeric type) to prevent potential data type mismatches or loss.

new_data[std::string(nm[i])] = a[i];