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Scripts to estimate genetic ancestry proportions

Using either Admixture or Sourcefind

Access to the files, the software etc. and job submission are hard coded. Software are containers you can download. You would need to change how you call the software with singularity, how to access to the files and how jobs are submitted in your own cluster.

Admixture WW and Admixture

Just a wrap-uo script in each folder to call the Admixture procedure encoded here: https://gitlab.pasteur.fr/pluisi/admixture

fineStructure

Scripts from stage0 to stage6 described Ruderman, Luisi et al. 2022 paper . Call the scripts following their number.

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