Extra package for the AADR v62 HO

[nevrome]

This package includes modern HO genotype data not already included in the v62 1240K packages. It is a slightly larger superset of AADR_v54_1_p1_HO_Modern_not_in_1240K. The workflow for its preparation is documented here: https://github.com/poseidon-framework/aadr2poseidon/tree/main/AADR62.0_to_Poseidon2.7.1_HO

[nevrome]

AADR_SNPs_HO should be mapped to Nr_SNPs

[stschiff]

Great! So I noticed two errors (I think):

First, the capture type should not be OtherCapture but simply n/a, because this modern data was neither captured nor in fact sequenced, but mostly subject to Micro-Array genotyping. And even though that results in conceptually similar data (in that only specific SNPs are genotyped), it's really very different from Capture and Sequencing.
You've set GenotypePloidy to haploid, but if I'm correct and this was created by Array-Genotyping, the data is in fact diploid. I have not checked, though, but would be very surprised if not.

[nevrome]

Good spotting! Thanks!

My code to check for ploidy is insufficient. I have to assign diploid not just for the .DG suffix, but also for .SDG and .HO.