I have rewritten the GenBank puller so we should be able to do weekly runs. Still need to normalize - [x] Geo data - [x] Assembly method - [x] Sequencing method Furthermore - [x] Rewrite step should not overwrite files (doh!) And then I'll probably have to fix the ontology checker to match the new fields - [ ] ontology check - run on CLI Next update the CWL run to limit processing
I have rewritten the GenBank puller so we should be able to do weekly runs. Still need to normalize
Furthermore
And then I'll probably have to fix the ontology checker to match the new fields
Next update the CWL run to limit processing