Skip to content

Adds warnings when importing incorrectTSVTaxonomyFormat files.#379

Merged
colinvwood merged 29 commits intoqiime2:devfrom
Macabe222:single-taxon
Jan 16, 2026
Merged

Adds warnings when importing incorrectTSVTaxonomyFormat files.#379
colinvwood merged 29 commits intoqiime2:devfrom
Macabe222:single-taxon

Conversation

@Macabe222
Copy link
Copy Markdown
Contributor

@Macabe222 Macabe222 commented Dec 31, 2025

Adds UserWarning when importing TSVTaxonomyFormat files containing a maximum taxonomic depth of one level, and/or a trailing semicolon.

Addresses qiime2/q2-feature-table#341
Blocked by rachis-org/rachis#895

Comment thread q2_types/feature_data/_formats.py Outdated
Comment thread q2_types/feature_data/_formats.py Outdated
Comment thread q2_types/feature_data/_formats.py Outdated
@Macabe222 Macabe222 changed the title Adds Validation Errors when importing incorrectTSVTaxonomyFormat files. Adds warnings when importing incorrectTSVTaxonomyFormat files. Jan 8, 2026
Comment thread q2_types/feature_data/_formats.py Outdated
Comment thread q2_types/feature_data/_formats.py Outdated
Comment thread q2_types/feature_data/tests/test_formats.py Outdated
@colinvwood colinvwood moved this to In Development in 2026.1 ❄️ Jan 9, 2026
@colinvwood colinvwood added the stat:blocked This cannot be resolved until something else has changed. label Jan 12, 2026
@colinvwood colinvwood moved this from In Development to In Review in 2026.1 ❄️ Jan 12, 2026
Comment thread q2_types/feature_data/_formats.py Outdated
Comment thread q2_types/feature_data/_deferred_setup/_validators.py Outdated
Comment thread q2_types/feature_data/_deferred_setup/_validators.py Outdated
@colinvwood colinvwood removed the stat:blocked This cannot be resolved until something else has changed. label Jan 16, 2026
@colinvwood colinvwood merged commit aecaa84 into qiime2:dev Jan 16, 2026
3 of 4 checks passed
@colinvwood colinvwood moved this from In Review to Changelog Needed in 2026.1 ❄️ Jan 16, 2026
@colinvwood colinvwood moved this from Changelog Needed to Completed in 2026.1 ❄️ Jan 20, 2026
@colinvwood colinvwood removed their assignment Mar 31, 2026
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

No open projects
Status: Completed

Development

Successfully merging this pull request may close these issues.

3 participants