LOOT (by taxon) analysis: calculation error on % of misclassified Seqs?

[dougwyu]

I ran two LOOTs. When leaving one taxon out, the % misclassified in the last table (**misclassified sequences group by taxon) is always 100%, which is not correct, according to the other tables in the output and according to the LOOT by sequence analysis.

java -Xmx46g -jar classifier.jar loot -h -q MIDORI_UNIQUE_1.1_COI_RDP_.05_seqs.fasta -s MIDORI_UNIQUE_1.1_COI_RDP.fasta -t RDP_taxonomy_file.txt -o midori_leaveonetaxonout_test_0.05.txt

**misclassified sequences group by taxon
Tested Seqs (non-singleton)	misclassified	pct misclassified
26881	26881	1
26881	26881	1
16	16	1
11	11	1
11	11	1
10	10	1
0	0	0
...

java -Xmx46g -jar classifier.jar loot -q MIDORI_UNIQUE_1.1_COI_RDP_.05_seqs.fasta -s MIDORI_UNIQUE_1.1_COI_RDP.fasta -t RDP_taxonomy_file.txt -o midori_leaveoneseqout_test_0.05.txt

**misclassified sequences group by taxon
Tested Seqs (non-singleton)	misclassified	pct misclassified
26881	2363	0.087905956
26881	2363	0.087905956
16	3	0.1875
11	0	0
11	0	0
10	0	0
...