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Guide to bacterial genome assembly
Ryan Wick edited this page Jun 7, 2024
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This guide has been moved to my blog:
rrwick.github.io/2020/10/30/guide-to-bacterial-genome-assembly.html
- Home
- Software requirements
- Installation
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How to run Trycycler
- Quick start
- Step 1: Generating assemblies
- Step 2: Clustering contigs
- Step 3: Reconciling contigs
- Step 4: Multiple sequence alignment
- Step 5: Partitioning reads
- Step 6: Generating a consensus
- Step 7: Polishing after Trycycler
- Illustrated pipeline overview
- Demo datasets
- Implementation details
- FAQ and miscellaneous tips
- Other pages
- Guide to bacterial genome assembly (choose your own adventure)
- Accuracy vs depth