7 Output

The Output of the function is a list containing a block in each element. For each block the following information are stored:

1. Sequence of nodes in the window cluster
2. Start of the block (in windows, SNPs and bp)
3. End of the block (in windows, SNPs and bp)
4. Sequence of the group in each window
5. Number of haplotypes in the block
6. List of Haplotypes in the block
7. 1. Sequence of alleles in the block (major variant)
   2. Frequency of the major variant
8. – 12. Internal stuff to save computation time in the algorithm (Only in the output using developer-mode)

To not only get the haplotype block library but additionally the window-dataset, the window-cluster and general information on each window get the parameter big_output to TRUE.