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patch converter tool#2049

Merged
bgruening merged 1 commit intousegalaxy-eu:masterfrom
gsaudade99:patch/converter_gff_to_bed
May 8, 2026
Merged

patch converter tool#2049
bgruening merged 1 commit intousegalaxy-eu:masterfrom
gsaudade99:patch/converter_gff_to_bed

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@gsaudade99
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  File "/opt/galaxy/server/lib/galaxy/datatypes/converters/gff_to_bed_converter.py", line 27
    out.write(f"{elems[0]}\t{start}\t{elems[4]}\t{name}\t0\t{strand}\n")
                                                                      ^
SyntaxError: invalid syntax

This is because the tool was running with the legacy container with an older version of python. We can either run it as an internal tool or add a specific container with python > 3.6.

This patch is live and working (:

@gsaudade99 gsaudade99 requested a review from bgruening May 8, 2026 10:42
@bgruening
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I'm going to merge this, but I think we should add more comments to those tools, why we add them ... at some point we want to work on it and make them run in normal containers I think.

@bgruening bgruening merged commit 8556eda into usegalaxy-eu:master May 8, 2026
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2 participants