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Stian Soiland-Reyes edited this page Mar 16, 2020 · 30 revisions

Fair Data

As an initial remark about data sharing: SARS-CoV-2 genomes are sequenced by a variety of different institutions, who submit their results to GISAID.org. From there, these data are only accessible after making a user account and then clicking through the UI to get the record you want. Simply fetching all genomes (it's only a few hundred, and they're 30k bases each so it's not a huge set) is currently not possible at all, let alone via an API.

Communication

Coming.

Participants

  • Mark Wilkinson
  • Stian Soiland-Reyes

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