Home Learning

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Background

• Many people have time to learn about virus genome at home
• Create a home learning material for bioinformatics beginners
• Presentation

How to Map COVID-19 Spread?

• Tutorial (5 min)

What is RNA Sequence?

How to Download Sequences?

• How to download the RNA sequence data of coronaviruses from public data archive.
• Tutorial (5 min)

How to Calculate GC-Content?

• RNA sequence consists of 4 type of characters (= nucleotides): A & T(U) & G & C. What is the potion of G & C?
• Tutorial (5 min)

How to Compare Poly-A Length?

ATGC or AUGC which and why?

Where are Genes?

• From the sequence, proteins are translated. Those regions of the sequence are called open reading frame (ORF).
• Tutorial (10min)

How to Draw Phylogenetic Tree

• Tutorial (10 min)

Working Plan

• Date: April 5-10 (6 days)
• Time: 19:00-22:00 Japan (= 12:00-15:00 Central Europe)
• Slack: #homelearning
• Remo: https://live.remo.co/e/virtual-biohackathon

Participants

• Pitagora Network
• Ryota Yamanaka
• Tazro Ohta
• Victoria Dominguez Del Angel
• Hirotaka Suetake
• Makoto Ikeda
• Tomoya Tanjo

References (External Materials)