-
Notifications
You must be signed in to change notification settings - Fork 31
Ontology
Philippe Rocca-Serra edited this page Apr 11, 2020
·
33 revisions
Work on semantic standards for sharing COVID-19 data. Update ontologies with COVID-19 and CoV related concepts to make knowledge machine-readable and actionable for mining, logical reasoning, etc...
- slack (#ontology)
- Robert Hoehndorf
- Núria Queralt Rosinach
- Yongqun "Oliver" He
- Danielle Welter
- Philippe Rocca-Serra
- Claus Weiland
| date | virtual meeting venue | time 1 | time 2 |
|---|---|---|---|
| 07.04.2020 | https://kaust.zoom.us/j/148518115 | 9 a.m./10 a.m. (GMT/CEST) | |
| 08.04.2020 | https://kaust.zoom.us/j/148518115 | 4pm CEST 11pm Tokyo 7am PDT | |
| 09.04.2020 | https://kaust.zoom.us/j/148518115 | 10am CEST 5pm Tokyo 1am PDT | 4pm CEST 11pm Tokyo 7am PDT |
| 10.04.2020 | https://kaust.zoom.us/j/148518115 | 10am CEST 5pm Tokyo 1am PDT | 4pm CEST 11pm Tokyo 7am PDT |
| 11.04.2020 | https://kaust.zoom.us/j/148518115 | 10am CEST 5pm Tokyo 1am PDT | 4pm CEST 11pm Tokyo 7am PDT |
- Update relevant biomedical ontologies
- Domain experts
- Curation
- Semantics: OBO, OWL, Description Logics
- Data modeling and Linkeddata
- New explicit and formal specifications of concepts related to COVID-19
- patient derived sample metadata annotation profile (OBO, schema.org mapping)
- prototype file uploader with sample metadata form
- virtualBH quantitative traits and epidemiology data modeling
- ShEx expression for sequencing samples
- Integration with Arvado test workbench: https://workbench.lugli.arvadosapi.com/collections/lugli-4zz18-z513nlpqm03hpca#Files
- Text mining and analysis
- Wikidata
- Knowledge graphs
- Machine learning
- FAIRDATA
- Translation
You can find and contribute to project ideas.
- https://www.ebi.ac.uk/ena/submit/influenza-checklist
- ENA Influenza virus reporting standard checklist ERC000032 as json
- Stanford Health Care Clinical observations: [BLOG POST] [DATA]