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Achievement: Pull Sharkx2

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Achievement: Pull Sharkx2

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zeinab-sheikhi/README.md

Typing SVG

I’m a Machine Learning Researcher in AI for Genomics, currently based in Paris, working at the intersection of deep learning, biological data, and computational pipelines.

My recent work includes:

  • Building deep learning models for short-read structural variant (SV) calling
  • Developing scalable ML infrastructure (cloud, orchestration, CI/CD)
  • Experimenting with LLM-powered scientific agents using MCP
  • Applying ML to real-world biological and biomedical datasets

🛠️ Skills
Programming Languages Python, Java, Dart
Machine Learning & Deep Learning PyTorch, scikit-learn
Data Analysis & Visualization Pandas, Seaborn
Cloud & CI/CD AWS, Docker
Backend Development FastAPI, Flask, MCP
Frontend Development Flutter

🚀 Past Work

  • 🧬 Archon
    A CNN-based model for detecting genomic structural variants from short-read sequencing data.

  • 🏦 HamrahShahrPlus Mobile Banking App (CityDi)
    Developed a Flutter-based mobile app with 1.5M+ users across Android, iOS, and web.

  • 🚚 Vehicle Overload Detection System
    Built backend with Flask and MongoDB and developed a Windows desktop application with Flutter.

Pinned Loading

  1. wifi-fingerprint-positioning-backend wifi-fingerprint-positioning-backend Public

    This project implements a backend for WiFi positioning using Flask, SQLAlchemy, and PostgreSQL. It features endpoints for storing and retrieving WiFi fingerprint data. Key technologies include mach…

    Python

  2. wifi-fingerprint-positioning-frontend wifi-fingerprint-positioning-frontend Public

    Flutter app for Positioning with Wifi Signal

    Dart

  3. reproduce-gpt2 reproduce-gpt2 Public

    This repository is based on Andrej Karpathy's tutorial for reproducing GPT-2 from scratch. It covers building the network, optimizing training, and refining the model.

    Python

  4. mcp-alphafold mcp-alphafold Public

    Model Context Protocol for AlphaFold

    Python 1

  5. zofiamilczarek/pii-projet-tal zofiamilczarek/pii-projet-tal Public

    Jupyter Notebook

  6. french-date-extractor french-date-extractor Public

    A Python project to extract publication dates from French PDF documents and their corresponding URLs.

    Jupyter Notebook 1

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