Project: NIH CAFE

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Overview

Activities and tasks related to our participation in the NIH CAFE project. Work includes biomedical metadata support and geospatial support and data curation.

CAFE Team Requests

• Activity: CAFE team requests #358

Development Issues

CAFE Team Development Requests

• Feature Request/Idea: ISO 19115 versus Dataverse Geospatial Metadata Block (Proposed Changes) dataverse#10398 (2024-12-09, Pending)
• Conditionally Required Entries in Custom Metadata Blocks dataverse#10576 (2024-12-09, Sprint Ready)

Other Related Issues & PRs

• Uniquedownloads API inconsistent with file downloads count on dataverse dataverse#11623
• Feature Request/Idea: Native API access to upload collection logos and Theme specifications  dataverse#10194
• As a Dataverse collection admin, I want to use the UI to link harvested datasets into my collection dataverse#4025 (2024-12-04, Functionality available in API, not UI until post-SPA)

Metrics

• CAFE Download Metrics: https://github.com/cmbz/dv-api-metrics

Complete

• Allow Multiple Data Sources in Custom Metadata Block dataverse.harvard.edu#287
• Add Data Curation Tool to Harvard Dataverse Repository dataverse.harvard.edu#32
• DisplayOnCreate Fixes dataverse#11343
• Ensure Visibility of Non-Required Metadata Blocks on Dataset Creation dataverse#10476
• Implement Dropdown Selector for NIH Controlled Vocabulary in Keywords dataverse.harvard.edu#267
• Add support for OAI-harvesting from DataCite dataverse#10909
• Implement Dropdown for Dataset Tagging in Metadata dataverse#10743
• Add "Submit for Review" Option for Datasets Uploaded by CAFE Admin dataverse#10577
• For harvesting, allow advanced feature of using listRecords vs ListIdentifiers dataverse#10936
• Allow Harvesting to use arbitrary sets dataverse#10937
• Searchable Facets: Searchable facets displayed for CAFE collection should reflect the metadata in the searchable facets dialogue box EDIT-General Information dataverse.harvard.edu#265
• Zip files containing "shape file" folder should successfully upload  dataverse#9384
• ".qpj" file taken out of QGIS Shapefile zip dataverse#8134
• Load updated custom CAFE metadata block (displayname changed from "Metadata About Data Location" to "Metadata About Geospatial Files") to demo and prod dataverse.harvard.edu#244
• File Upload: file upload for collection with metadblocks that have required, single, controlled vocab fails dataverse#10385
• Geospatial metadata block > bounding box coordinates fields > tool tips are INCORRECT and mention use of commas dataverse#10397
• Geospatial Search behavior dataverse#9798

Related

• Epic: NIH CAFE Grant Tasks #157 (closed on 2024/03/20, in favor of current tracking issue)
• https://github.com/IQSS/dataverse-HDV-Curation/issues/500

Resources

• Customization and Improvement of Dataverse for the CAFE Project
• Google Drive Folder
• Development Issue Tracker: IQSS Dataverse Project (view)

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Curation Issues

Pursuing Collaborations with:

• http://wellcome.org/
• https://openclimatecampaign.org/

Reports

CAFE Dataverse Software Improvements

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March 2024

The following issue was completed:

• ".qpj" file taken out of QGIS Shapefile zip dataverse#8134

Additional issues were identified and added for future sprints:

• File Upload: file upload for collection with metadblocks that have required, single, controlled vocab fails dataverse#10385
• Geospatial metadata block > bounding box coordinates fields > tool tips are INCORRECT and mention use of commas dataverse#10397
• Feature Request/Idea: ISO 19115 versus Dataverse Geospatial Metadata Block (Proposed Changes) dataverse#10398
• Feature Request/Idea: Native API access to upload collection logos and Theme specifications  dataverse#10194

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April 2024

Development

• A new document Customization and Improvement of Dataverse for the CAFE Project was created to capture and address user feedback from the CAFE team.

Additional issues created for future sprints. Sizing underway:

• Implement Dropdown Selector for NIH Controlled Vocabulary in Keywords dataverse.harvard.edu#267
• Ensure Visibility of Non-Required Metadata Blocks on Dataset Creation dataverse#10476
• Integrate Geographic Unit Field into Geographic Coverage Metadata Block dataverse#10502
• Searchable Facets: Searchable facets displayed for CAFE collection should reflect the metadata in the searchable facets dialogue box EDIT-General Information dataverse.harvard.edu#265

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May 2024

• Conditionally Required Entries in Custom Metadata Blocks dataverse#10576
• Add "Submit for Review" Option for Datasets Uploaded by CAFE Admin dataverse#10577
• Alexis': Monthly Summary - May 2024