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Compress and index annotated VCF files#599
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szilvajuhos merged 7 commits intoSciLifeLab:masterfrom Jun 18, 2018
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marcelm
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Jun 14, 2018
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| script: | ||
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| cat ${vcf} | bgzip > ${vcf}.gz |
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Use bgzip < ${vcf} > ${vcf}.gz instead to avoid winning the “Useless Use of Cat Award” 😺
szilvajuhos
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Jun 18, 2018
jherrero
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in UCL-BLIC/Sarek_v2.2.1
Apr 11, 2019
Compress and index annotated VCF files
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close #591
New processes
CompressSnpeffVCFandCompressVEPvcfto compress and index VCFs.Since we're using the VCFs from snpEff into VEP, it was complicated to make just one process, so for the moment, it's these two.
I'll try to improve in a future refactoring session.