Upload 2.0 support for data library creation.

[jmchilton]

Will convert older style library YAML format from ephemeris to modern version, will attempt to implement a subset of the modern format with legacy APIs as needed.

Some of the defaults that only made sense for training data have been hidden behind a new --training flag.

[bgruening]

If we really want to support the old format as well we should add a test with the old file to https://github.com/galaxyproject/ephemeris/blob/master/tests/test_workflow_and_data.sh#L20

[bgruening]

• legacy mode of new and old yaml file puts file into a lib with names like https://raw.githubusercontent.com/yhoogstrate/segmentation-fold/55d0bb28b01e613844ca35cf21fa41379fd72770/scripts/energy-estimation-utility/tests/test-data/workflow-test_cd-box_kturns.xml --> can we use here just the filename?

[jmchilton]

If we really want to support the old format as well we should add a test with the old file to https://github.com/galaxyproject/ephemeris/blob/master/tests/test_workflow_and_data.sh#L20

Yeah - I added a file to do that but forgot to update the test. I'll do that.

[rhpvorderman]

Long URLs are ignored by standard. So I cannot see a reason why line length should be ignored.

[rhpvorderman]

Pull request looks very nice. Travis only fails on a few linting errors.

[jmchilton]

legacy mode of new and old yaml file puts file into a lib with names like https://raw.githubusercontent.com/yhoogstrate/segmentation-fold/55d0bb28b01e613844ca35cf21fa41379fd72770/scripts/energy-estimation-utility/tests/test-data/workflow-test_cd-box_kturns.xml --> can we use here just the filename?

Added an example of how to do that and explained why I'd prefer not to make it automatic in this commit's comment:

dea1ff2

[bgruening]

Thanks @jmchilton!