Taxonomic Update for obitools4 #7921
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kpayet26 wants to merge 19 commits intogalaxyproject:mainfrom
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I think I need that skip-version-check-label, and I'm not able to add it myself. Can someone help me with it? |
change the test in obirefidx and obitag
bernt-matthias
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Co-authored-by: M Bernt <m.bernt@ufz.de>
Add validator for name_query parameter from obitaxonomy and for integer parameter from obipcr
Add taxonomic options to obigrep, obiannotate and obiuniq
add test for newick output, add conditional for newick output because of incompatible option
add filter by rank option to obitaxonomy, obigrep and obiannotate
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Hello,
This PR add a few more tools for taxonomic attribution, manage taxonomic database and more.
Tools added : obitaxonomy, obipcr, obitag, obirefidx and obicomplement.
Additional options for the handling of taxonomic databases will be integrated into all prior tool versions.
FOR CONTRIBUTOR:
There are two labels that allow to ignore specific (false positive) tool linter errors:
skip-version-check: Use it if only a subset of the tools has been updated in a suite.skip-url-check: Use it if github CI sees 403 errors, but the URLs work.