Skip to content

Dev#2

Merged
jfy133 merged 56 commits intojfy133:devfrom
nf-core:dev
Dec 2, 2020
Merged

Dev#2
jfy133 merged 56 commits intojfy133:devfrom
nf-core:dev

Conversation

@jfy133
Copy link
Copy Markdown
Owner

@jfy133 jfy133 commented Dec 2, 2020

nf-core/eager pull request

PR checklist

  • This comment contains a description of changes (with reason)
  • If you've fixed a bug or added code that should be tested, add tests!
  • If necessary, also make a PR on the nf-core/eager branch on the nf-core/test-datasets repo
  • Ensure the test suite passes (nextflow run . -profile test,docker --paired_end).
  • Make sure your code lints (nf-core lint .).
  • Documentation in docs is updated
  • CHANGELOG.md is updated
  • README.md is updated

Learn more about contributing: CONTRIBUTING.md

jfy133 and others added 30 commits October 21, 2020 08:57
Get AWS last minute fixes
Important! Template update for nf-core/tools v1.11
Added link to 1240k bedfile. Typo.
fix aws full test profiles
Bump runtimes for human stresstesting
Final chance...
jfy133 and others added 26 commits November 12, 2020 09:12
As suggested by Paolo:

"maxRetries with *no* errorStrategy delegates to Batch retry, NF does not handle it directly"

and 

"when setting errorStrategy = 'retry' NF re-launch it, no exit code is weird, it should relaunch the same"
Clarified merging details in TSV input section
Add integrated GATK 3.5 💪
@jfy133 jfy133 merged commit 0ff78c5 into jfy133:dev Dec 2, 2020
jfy133 pushed a commit that referenced this pull request Jan 14, 2021
Get the latest dev version to have correct CHANGELOG
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

6 participants