MultiQC config rebuild and documentation changes#108
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jfy133 wants to merge 4 commits intonf-core:devfrom
jfy133:dev
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MultiQC config rebuild and documentation changes#108jfy133 wants to merge 4 commits intonf-core:devfrom jfy133:dev
jfy133 wants to merge 4 commits intonf-core:devfrom
jfy133:dev
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Beginning rebuild of custom MultiQC configuration file. This commit starts with separating out pre- and post-adapter removal config files. This will require modification to nextflow channel outputs for the corresponding FastQC steps to include in the output html and/or zip files the suffixs: '_preAR_fastqc.html' and '_postAR_fastqc.html' for pre- and post-adapterremoval steps accordingly.
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Actually - the 'html' bit doesn't work - is seems zip is indeed required. Will send new PR |
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This includes:
NOTE: New MultiQC config will not work until the FastQC outputs are changed accordingly (see the commit)
Many thanks to contributing to nf-core/eager!
Please fill in the appropriate checklist below (delete whatever is not relevant). These are the most common things requested on pull requests (PRs).
PR checklist
nextflow run . -profile test,docker).nf-core lint .).docsis updatedCHANGELOG.mdis updatedREADME.mdis updatedLearn more about contributing: https://github.com/nf-core/eager/tree/master/.github/CONTRIBUTING.md