fix aws full test profiles

.github/workflows/awsfulltest.yml

@@ -38,4 +38,4 @@ jobs:
             --job-name nf-core-eager \
             --job-queue $AWS_JOB_QUEUE \
             --job-definition $AWS_JOB_DEFINITION \
-            --container-overrides '{"command": ["nf-core/eager", "-r '"${GITHUB_SHA}"' -profile awsfulltest --outdir s3://'"${AWS_S3_BUCKET}"'/eager/results-'"${GITHUB_SHA}"' -w s3://'"${AWS_S3_BUCKET}"'/eager/work-'"${GITHUB_SHA}"' -with-tower"], "environment": [{"name": "TOWER_ACCESS_TOKEN", "value": "'"$TOWER_ACCESS_TOKEN"'"}]}'
+            --container-overrides '{"command": ["nf-core/eager", "-r '"${GITHUB_SHA}"' -profile test_full --outdir s3://'"${AWS_S3_BUCKET}"'/eager/results-'"${GITHUB_SHA}"' -w s3://'"${AWS_S3_BUCKET}"'/eager/work-'"${GITHUB_SHA}"' -with-tower"], "environment": [{"name": "TOWER_ACCESS_TOKEN", "value": "'"$TOWER_ACCESS_TOKEN"'"}]}'

CHANGELOG.md

@@ -9,6 +9,8 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
 
 ### `Fixed`
 
+* Fixed AWS full test profile.
+
 ### `Dependencies`
 
 ## [2.2.0] - Ulm - 2020-10-20

nextflow.config

@@ -282,18 +282,7 @@ profiles {
     podman.enabled = true
   }
   test { includeConfig 'conf/test.config' }
-}
-
-profiles {
-  conda { process.conda = "$baseDir/environment.yml"}
-  debug { process.beforeScript = 'echo $HOSTNAME'}
-  docker {
-    docker.enabled = true
-  }
-  singularity {
-    singularity.enabled = true
-  }
-  test { includeConfig 'conf/test.config'}
+  test_full { includeConfig 'conf/test_full.config' }
   test_bam { includeConfig 'conf/test_bam.config'}
   test_fna { includeConfig 'conf/test_fna.config'}
   test_humanbam { includeConfig 'conf/test_humanbam.config' }