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Fix file staging for print_nuclear_contamination #667

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Merged
TCLamnidis merged 7 commits into from
Jan 27, 2021
Merged

Fix file staging for print_nuclear_contamination #667

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29b6e14
Merge pull request #661 from nf-core/dev
jfy133 Jan 14, 2021
87254a5
Fix file staging for print_nuclear_contamination
IdoBar Jan 19, 2021
c7a1ebc
Fix file staging for print_nuclear_contamination
IdoBar Jan 19, 2021
44869f1
Merge branch 'patch-3' of https://github.com/IdoBar/eager into patch-3
IdoBar Jan 19, 2021
0968111
Merge branch 'dev' into patch-3
apeltzer Jan 19, 2021
e551d76
Correct line spacing in CHANGELOG.md
IdoBar Jan 20, 2021
966f7e0
Correct file staging for nuclear contamination process
IdoBar Jan 26, 2021
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -9,8 +9,10 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.

### `Fixed`

- [#666](https://github.com/nf-core/eager/issues/666) - Fixed input file staging for `print_nuclear_contamination`
- [#631](https://github.com/nf-core/eager/issues/631): - Update minimum Nextflow version to 20.07.1, due to unfortunate bug in Nextflow 20.04.1 causing eager to crash if patch pulled


### `Dependencies`
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### `Deprecated`
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2 changes: 1 addition & 1 deletion main.nf
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Expand Up @@ -2932,7 +2932,7 @@ process print_nuclear_contamination{
params.run_nuclear_contamination

input:
val 'Contam' from ch_from_nuclear_contamination.map { it[7] }.collect()
path 'Contam' from ch_from_nuclear_contamination.map { it[7] }.collect()
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output:
file 'nuclear_contamination.txt'
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