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added janno-file for Antonio et al. 2024#213

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stschiff wants to merge 1 commit intomasterfrom
add_2024_Antonio_janno
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added janno-file for Antonio et al. 2024#213
stschiff wants to merge 1 commit intomasterfrom
add_2024_Antonio_janno

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@stschiff stschiff commented Oct 8, 2024

This PR only adds a Janno file, for the 2024 Antonio et al. paper.

I have merged the AMS dating table with the sample metadata table from the supporting material of the paper and done some conversions. As Group_Name I have now opted to just use "Dummy_Group" until someone comes up with something better.

This concludes the work I started at our spring cleaning, even though in the meantime the new AADR has come out, so this PR might be obsolete now. Let's see. I'm putting it here anyway, maybe we can eventually get it in via Minotaur using this Janno.

@stschiff stschiff added the only .janno This PR does not feature a full package, but only a .janno file label Oct 8, 2024
@stschiff stschiff changed the title added janno-file added janno-file for Antonio et al. 2024 Dec 3, 2024
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stschiff commented Dec 3, 2024

I will email the first author and ask for the genotype data to submit here or to send me so I can add it.

@stschiff stschiff self-assigned this Dec 3, 2024
@stschiff stschiff removed the only .janno This PR does not feature a full package, but only a .janno file label Jan 31, 2025
@stschiff stschiff marked this pull request as draft January 31, 2025 16:09
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stschiff commented Sep 4, 2025

Update: I've emailed the corresponding author from the paper to request the data.

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stschiff commented Dec 8, 2025

OK, so I've given up here, I've contacted the authors multiple times, and so far they haven't supplied the genetic data. Weirdly, however, there is now another Pull Request on Antonio et al. (#302), and I wonder where @Tlkhi got the genotype data from. But these two Pull Requests handle the same paper, I think, so I suppose we can close this one now?

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nevrome commented Dec 8, 2025

@Tlkhi briefly explains how he generated the data in a README here: https://github.com/poseidon-framework/community-archive/blob/900627c94a6389c6a7f4dd8d65c7a2f2b29581ac/2024_Antonio_HighMobility/README.md

The .janno file in #302 is more complete and the package over there is ready for merging. I will go with that. Please forgive that I did not notice and address this overlap sooner.

@nevrome nevrome closed this Dec 8, 2025
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