Add NEMO Pulsar destination via pulsar-relay

files/galaxy/config/user_preferences_extra_conf.yml

@@ -55,7 +55,8 @@ preferences:
                   # - ["Freiburg (Germany) - Condor cluster using Singularity with Conda", condor_singularity_with_conda]
                   # - ["Joint remote GPU cluster using docker engine - Galaxy will decide where to put your job", remote_condor_cluster_gpu_docker]
                   # - ["Joint remote CPU cluster using singularity engine - Galaxy will decide where to put your job", remote_condor_cluster_singularity]
-                  - ["Freiburg (Germany) - Mira's test Pulsar", mira-pulsar]
+                  # - ["Freiburg (Germany) - Mira's test Pulsar", mira-pulsar]
+                  - ["Freiburg (Germany) - bwForCluster NEMO 2", nemo-pulsar]
                   # - ["Freiburg (Germany) - de.NBI cloud - docker", remote_cluster_mq_docker_de01]
                   #- ["Freiburg (Germany) - de.NBI cloud - singularity, 2wd true", remote_cluster_mq_singularity_2wdtrue_de01]
                   # - ["Tübingen (Germany) - de.NBI cloud", remote_cluster_mq_de02]

files/galaxy/tpv/destinations.yml.j2

@@ -450,6 +450,34 @@ destinations:
       require:
         - ufz-eve-pulsar
 
+  pulsar_nemo_tpv:
+    inherits: pulsar_default
+    runner: pulsar_eu_nemo
+    max_accepted_cores: 16
+    max_accepted_mem: 64
+    min_accepted_gpus: 0
+    max_accepted_gpus: 0
+    env:
+      LC_ALL: C
+      SINGULARITY_CACHEDIR: /home/fr/fr_ds722/pulsar/container_cache
+      TMP: $_GALAXY_JOB_TMP_DIR
+      TEMP: $_GALAXY_JOB_TMP_DIR
+      TMPDIR: $_GALAXY_JOB_TMP_DIR
+    params:
+      jobs_directory: /home/fr/fr_ds722/pulsar/jobs_directory
+      singularity_enabled: true
+      singularity_command: apptainer
+      singularity_volumes: "$job_directory:rw,$tool_directory:ro,$job_directory/outputs:rw,$working_directory:rw,/cvmfs/data.galaxyproject.org:ro"
+      singularity_default_container_id: "/cvmfs/singularity.galaxyproject.org/all/perl:5.26"
+      container_resolvers:
+        - type: explicit_singularity
+        - type: cached_mulled_singularity
+          cache_directory: /cvmfs/singularity.galaxyproject.org/all/
+          cache_directory_cacher_type: dir_mtime
+    scheduling:
+      require:
+        - nemo-pulsar
+
   #############################
   # LOCAL CONDOR DESTINATIONS #
   #############################

templates/galaxy/config/job_conf.yml

@@ -250,8 +250,15 @@ galaxy_jobconf:
         amqp_consumer_timeout: 2.0
         amqp_publish_retry: "true"
         amqp_publish_retry_max_retries: 60
+    - id: pulsar_eu_nemo
+      load: galaxy.jobs.runners.pulsar:PulsarMQJobRunner
+      params:
+        relay_url: "{{ pulsar_nemo_relay_url }}"
+        relay_username: "{{ pulsar_nemo_relay_username }}"
+        relay_password: "{{ pulsar_nemo_relay_password }}"
+        galaxy_url: "https://usegalaxy.eu"
+
 
-
   default_destination: tpv_dispatcher
   destinations:
     - id: local