Biohackathon fixes#2695

Merged

nsoranzo merged 28 commits into

galaxyproject:masterfrom

mvdbeek:biohackathon_fixes

Nov 28, 2019

Commits on Nov 28, 2019

Update link to Abyss

mvdbeek
authored and
nsoranzo
committed
Fix kobas test output files

mvdbeek
authored and
nsoranzo
committed
Fix more links

mvdbeek
authored and
nsoranzo
committed
Fix obitools homepage

mvdbeek
authored and
nsoranzo
committed
Fix data_manager_mothur on python3

mvdbeek
authored and
nsoranzo
committed
Add python3.7 dependency for sam_fasta_index_builder.xml

mvdbeek
authored and
nsoranzo
committed
Add python3.7 to data_manager_twobit_builder

mvdbeek
authored and
nsoranzo
committed
Fix data_manager_rsync_g2 on python3 and tests

mvdbeek
authored and
nsoranzo
committed
Fix salmon data manager profile tag

mvdbeek
authored and
nsoranzo
committed
Enable dependency resolution for twobit_build data manager

mvdbeek
authored and
nsoranzo
committed
Fix data_manager_snpsift_dbnsfp test and requirements

mvdbeek
authored and
nsoranzo
committed
Fix rgrnastar requirements and test

mvdbeek
authored and
nsoranzo
committed
Add exact requirements to fetch_refseq.xml

mvdbeek
authored and
nsoranzo
committed
bam2bam: Fix linting error in tools/bax2bam/bax2bam.xml

mvdbeek
authored and
nsoranzo
committed
Bump data_manager_refseq version

mvdbeek
authored and
nsoranzo
committed
bump data_manager_fetch_mothur version

mvdbeek
authored and
nsoranzo
committed
Bump data_manager_rsync version

mvdbeek
authored and
nsoranzo
committed
Bump salmon_index_builder version

mvdbeek
authored and
nsoranzo
committed
Bump data_mananger_sam_fasta_index_builder version

mvdbeek
authored and
nsoranzo
committed
Bump data_manager_snpsift_dbnsfp version

mvdbeek
authored and
nsoranzo
committed
Bump rna_star_index_builder version

mvdbeek
authored and
nsoranzo
committed
Bump twobit_builder version

mvdbeek
authored and
nsoranzo
committed
Fix fetch_refseq test

mvdbeek
authored and
nsoranzo
committed
Use better obitools URL

mvdbeek
and
nsoranzo
committed
autopep8, drop list casting in data_manager_rsync.py

mvdbeek
authored and
nsoranzo
committed
Fix picrust test output

mvdbeek
authored and
nsoranzo
committed
Fix kobas_annotate tool
nsoranzo
committed
Cleanup kobas
nsoranzo
committed

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Biohackathon fixes#2695

Biohackathon fixes#2695
nsoranzo merged 28 commits into
galaxyproject:masterfrom
mvdbeek:biohackathon_fixes

Commits on Nov 28, 2019

Update link to Abyss

Fix kobas test output files

Fix more links

Fix obitools homepage

Fix data_manager_mothur on python3

Add python3.7 dependency for sam_fasta_index_builder.xml

Add python3.7 to data_manager_twobit_builder

Fix data_manager_rsync_g2 on python3 and tests

Fix salmon data manager profile tag

Enable dependency resolution for twobit_build data manager

Fix data_manager_snpsift_dbnsfp test and requirements

Fix rgrnastar requirements and test

Add exact requirements to fetch_refseq.xml

bam2bam: Fix linting error in tools/bax2bam/bax2bam.xml

Bump data_manager_refseq version

bump data_manager_fetch_mothur version

Bump data_manager_rsync version

Bump salmon_index_builder version

Bump data_mananger_sam_fasta_index_builder version

Bump data_manager_snpsift_dbnsfp version

Bump rna_star_index_builder version

Bump twobit_builder version

Fix fetch_refseq test

Use better obitools URL

autopep8, drop list casting in data_manager_rsync.py

Fix picrust test output

Fix kobas_annotate tool

Cleanup kobas